{ "_id": "6a100e35acfb0bcc41c811ed", "Package": "trace", "Title": "Tandem Repeat Analysis by Capillary Electrophoresis", "Version": "1.0.0", "Authors@R": "c(\nperson(\"Zachariah\", \"McLean\", , \"zachariah.louis.mclean@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-0968-0538\")),\nperson(\"Kevin\", \"Correia\", role = \"aut\"),\nperson(\"Andrew\", \"Jiang\", role = \"ctb\")\n)", "Description": "A pipeline for short tandem repeat instability analysis\nfrom fragment analysis data. Inputs of fsa files or peak\ntables, and a user supplied metadata data-frame. The package\nidentifies ladders, calls peaks, identifies the modal peaks,\ncalls repeats, then calculates repeat instability metrics (e.g.\nexpansion index from Lee et al. (2010)\n).", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "LazyData": "true", "URL": "https://zachariahmclean.github.io/trace/", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nzlib1g-dev", "Repository": "https://zachariahmclean.r-universe.dev", "Date/Publication": "2025-12-23 15:29:15 UTC", "RemoteUrl": "https://github.com/zachariahmclean/trace", "RemoteRef": "HEAD", "RemoteSha": "ace54658ca1bdc98f06f5a0ea5fd9fedc6518053", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 08:00:05 UTC", "User": "root" }, "Author": "Zachariah McLean [aut, cre, cph] (ORCID:\n),\nKevin Correia [aut],\nAndrew Jiang [ctb]", "Maintainer": "Zachariah McLean ", "MD5sum": "36a8e070c9e1cac78446ba398995eff8", "_user": "zachariahmclean", "_type": "src", "_file": "trace_1.0.0.tar.gz", "_fileid": 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